Each row is a chromosome, drawn to scale by length. Every tick is one candidate SNP call, colored by whether it passed quality filtering.
Hover a tick for details.
Mean read depth per chromosome/contig (log scale — depth commonly spans several orders of magnitude). Bar length and the label both show the actual value.
Faded bars = contigs where reads mapped but mean mapping quality was low (MAPQ < 10) — a sign of repetitive/ambiguous alignment rather than confident coverage. Organelle contigs are naturally high-copy, so higher depth there is expected.
Hover a dot for details.
The full call set behind the charts above.
| Chromosome | Position | Change | Qual | Depth | Genotype | Status |
|---|